Selected edges are shown below with both ligands drawn side by side. The warm highlight is the soft-core region that changes during the transformation; the cool highlight is the common core that stays fixed.
16
Ligands
30
Edges
8
Repaired
0
Rejected
redundant-mst
Planner
Diagnostics
Network-level metrics. Machine time is estimated from published per-edge measurements and is a report only -- it played no part in choosing these edges.
Metric
Value
Total cost
30.366 scorer units
Estimated machine time
119.1 GPU-hours (about $47.64)
Mean cost per edge
1.012
Degree
min 2 · mean 3.75 · max 6
Isolated ligands
none
Diameter
6
Short cycles
42 of length ≤ 4
Robustness
100% of 100 trials stay connected at 5% edge failure; 16.0 ligands retained on average
30 edges over 16 ligands is 15 below the n*ln(n) precision floor of 45 (Pitman 2023). Below that floor precision degrades faster as the series grows; raise --edges-per-ligand or --n-edges to buy it back.
Network
Thicker edges are cheaper. Hollow red nodes are unconnected. Click a network edge or the index below to jump to its transformation card.
initial: 3 soft-core region(s) on side 1, 3 on side 2
iter 1 side 1: bridged 3 regions by demoting 1 atom(s) [19] [steiner:approximate]
iter 1 side 2: bridged 3 regions by demoting 1 atom(s) [19] [steiner:approximate]
final: 1/1 region(s), soft-core 4/13 atom(s)
initial: 2 soft-core region(s) on side 1, 2 on side 2
iter 1 side 1: bridged 2 regions by demoting 1 atom(s) [19]
iter 1 side 2: bridged 2 regions by demoting 1 atom(s) [19]
iter 1 side 1: absorbed 1 core atom(s) [29] stranded behind the soft-core
iter 1 side 2: absorbed 1 core atom(s) [29] stranded behind the soft-core
final: 1/1 region(s), soft-core 4/10 atom(s)
(orientation flipped: sides below refer to ejm43~ejm50)
closure: normalised raw soft-core 7/2 -> 8/3 atoms
initial: 2 soft-core region(s) on side 1, 2 on side 2
iter 1 side 1: bridged 2 regions by demoting 1 atom(s) [19]
iter 1 side 2: bridged 2 regions by demoting 1 atom(s) [19]
iter 1 side 1: absorbed 1 core atom(s) [29] stranded behind the soft-core
iter 1 side 2: absorbed 1 core atom(s) [29] stranded behind the soft-core
final: 1/1 region(s), soft-core 10/5 atom(s)