API reference

• Core
  • Data model
  • Options
  • Soft-core repair
  • Molecular graphs
  • Pipeline
  • Diagnostics and cost
  • Optimal design
  • Surgery and diagnostics
  • Intermediate ligands
  • Plugin registry
  • Contracts
  • Validation and errors
• Plugins
  • Mappers
  • Scorers
  • Planners
  • Exporters
  • Intermediate generators
• Input and output
  • load_fepplus_network()
  • load_ligands()
  • load_orion_network()
  • load_sdf()
  • load_smiles()
  • sanitize_name()
  • SCHEMA_VERSION
  • dump_network()
  • load_network()
  • network_to_dict()
  • DEFAULT_RESIDUE_NAMES
  • AmberMasks
  • build_amber_masks()
• Visualization
  • CORE_COLOR
  • SOFTCORE_COLOR
  • render_edge_svg()
  • render_molecule_svg()
  • render_network_svg()
  • render_report()
• Command-line interface
  • build_parser()
  • dispatch()
  • main()
  • cmd_export()
  • cmd_inspect()
  • cmd_map()
  • cmd_plan()
  • cmd_plugins()
  • cmd_replan()
  • cmd_report()
  • cmd_score()
  • COMPAT_CLI_PINS
  • add_compat_argument()
  • add_cost_units_argument()
  • add_ligand_arguments()
  • add_mapping_arguments()
  • add_network_arguments()
  • add_scorer_arguments()
  • add_softcore_arguments()
  • build_alignment_options()
  • build_mapping_options()
  • build_network_options()
  • explicit_dests()
  • parse_key_values()
  • resolve_compat()
• Graphical interface
  • EXPORT_KNOBS
  • KNOB_EXCLUSIONS
  • OUTPUT_DESTS
  • PIPELINE_KNOBS
  • PLANNER_KNOBS
  • WIDGETS
  • inactive_dests()
  • knob_parser()
  • plan_schema()
  • to_argv()
  • CachingMapper
  • MappingCache
  • RunCancelled
  • PlanRun
  • PlanSession
  • expand_ligand_paths()
  • build_server()
  • serve()